Initial commit: AirCoding V1.0.0 Alpha architecture baseline

Complete architecture document set with multi-model review remediation:
- Frozen interface contracts, runtime semantics, DB schemas
- Event/tool/error/provider registries
- Scheduler and main agent state machines
- C4 module/code views, solution architecture, baseline V1
- Multi-model review reports and joint assessment
- Phase-gate remediation complete (P0/P1/P2/UX resolved)
- Implementation plan with T-000A through T-045
- Reference folders kept as placeholders only

reference/atuin-18.16.1/.atuin/skills/release/SKILL.md

@@ -0,0 +1,213 @@
+---
+name: release
+description: >
+  Orchestrate a multi-step Atuin CLI release — version bumping, changelog
+  generation, PR creation, tagging, and crates.io publishing. Invoke with
+  /release or /release <version>.
+disable-model-invocation: true
+argument-hint: [version]
+---
+
+# Atuin CLI Release
+
+You are orchestrating a release of the Atuin CLI. Follow the steps below
+**in order**, pausing at each checkpoint for user confirmation. Do not skip
+steps or combine them.
+
+## Current State
+
+- Workspace version: !`sed -n '/^\[workspace\.package\]/,/^\[/s/^version = "\(.*\)"/\1/p' Cargo.toml`
+- Latest tag: !`git describe --tags --abbrev=0 2>/dev/null || echo "none"`
+- Suggested next version: !`git-cliff --bumped-version 2>/dev/null | sed 's/^v//' || echo "(unknown)"`
+
+---
+
+## Step 1 — Check Dependencies
+
+Verify these tools are installed: `git`, `gsed`, `cargo`, `gh`, `git-cliff`.
+
+Use `command -v` for each. If any are missing, report which ones and stop.
+
+Remember to use `gsed`, or else macOS flags to regular `sed`, later in the workflow.
+
+---
+
+## Step 2 — Determine Version
+
+The target version may be provided as `$ARGUMENTS`. If it's empty, use
+AskUserQuestion to ask for the new version (show the current state above
+for reference).
+
+After determining the version:
+- If it contains a `-` (e.g. `18.15.0-beta.1`), it is a **prerelease**.
+  Note this — it affects changelog and publish behavior later.
+- Show the user: `current → new` and whether it's a prerelease.
+- **Checkpoint:** Ask the user to confirm before proceeding.
+
+---
+
+## Step 3 — Set Up Working Directory
+
+Clone a fresh copy into a temp directory:
+
+```bash
+WORKDIR=$(mktemp -d)
+git clone git@github.com:atuinsh/atuin.git "$WORKDIR"
+```
+
+Print the working directory path so the user can find it if needed.
+
+NOTE:
+ALL subsequent Bash commands run from `$WORKDIR`.
+
+---
+
+## Step 4 — Create Branch & Update Versions
+
+1. Create a release branch named after the version (no `v` prefix):
+   `git checkout -b <VERSION>`
+
+2. Replace the old version with the new one in all `Cargo.toml` files.
+   **Escape dots** in the old version so sed treats them literally:
+
+   ```bash
+   VERSION_PATTERN="${OLD_VERSION//./\\.}"
+   find . -type f -name 'Cargo.toml' -not -path './.git/*' \
+       -exec gsed -i "s/$VERSION_PATTERN/$NEW_VERSION/g" {} \;
+   ```
+
+3. Run `cargo check` to update `Cargo.lock`.
+
+4. Show `git diff --stat` and the version-related lines from the diff:
+   ```bash
+   git diff --unified=0 -- '*.toml' | grep '^\+.*version' | grep -vF '+++'
+   ```
+   Remember to use macOS grep arguments on macOS systems.
+
+5. Verify the workspace version was actually updated by re-reading it
+   from `Cargo.toml`.
+
+6. **Checkpoint:** Show the diff summary and ask the user to confirm the
+   version changes look correct.
+
+---
+
+## Step 5 — Update Changelog
+
+The changelog strategy differs for prereleases vs stable releases:
+
+- **Prerelease:** Maintain a running `## [unreleased]` section containing
+  all changes since the last stable release. Use:
+  `git-cliff --unreleased --strip all`
+  (cliff.toml's `ignore_tags` already ignores beta/alpha tags, so
+  `--unreleased` spans back to the last stable release automatically.)
+
+- **Stable release:** Generate a versioned entry that replaces the
+  `[unreleased]` section. Use:
+  `git-cliff --unreleased --tag "v<VERSION>" --strip all`
+
+Then update `CHANGELOG.md`:
+
+1. If an existing `## [unreleased]` or `## [Unreleased]` section exists,
+   **remove it entirely** (the heading and all content up to the next
+   `## ` heading).
+
+2. Insert the new entry before the first existing `## ` version heading.
+
+3. **Checkpoint:** Read and display the new changelog entry to the user.
+   Ask if they want any edits. If so, make the requested changes using
+   the Edit tool. Repeat until they're satisfied.
+
+---
+
+## Step 6 — Commit & Push
+
+Stage all changes and commit:
+
+```
+chore(release): prepare for release <VERSION>
+```
+
+Push the branch with `--set-upstream origin`.
+
+---
+
+## Step 7 — Create PR & Wait for Merge
+
+### Create the PR
+
+Extract the changelog entry body (everything between the new `## ` heading
+and the next one) for the PR description.
+
+For prereleases, the heading to match is `## [unreleased]`.
+For stable releases, it's `## <VERSION>` (escape dots in the awk pattern).
+
+Create the PR:
+```bash
+gh pr create \
+    --title "chore(release): prepare for release <VERSION>" \
+    --body "<body with changelog>" \
+    --repo atuinsh/atuin
+    --draft
+```
+
+Show the PR URL to the user. Tell the user to go review and merge the PR.
+
+When the user reports the PR is merged, proceed to the next step.
+
+---
+
+## Step 8 — Tag Release
+
+Back in the working directory:
+
+```bash
+git checkout main
+git pull
+git tag "v<VERSION>"
+git push --tags
+```
+
+Tell the user the tag was pushed and the release CI workflow has been
+triggered.
+
+---
+
+## Step 9 — Publish to crates.io
+
+**If this is a prerelease**, skip this step entirely and tell the user.
+
+**If this is a stable release**, ask the user whether to publish.
+
+If yes, publish each crate **in dependency order** using `--no-verify`
+(the code already passed CI, and verification fails when crates.io
+hasn't indexed a freshly-published dependency yet):
+
+```
+atuin-common, atuin-client, atuin-ai, atuin-dotfiles, atuin-history,
+atuin-nucleo/matcher, atuin-nucleo, atuin-daemon, atuin-kv,
+atuin-scripts, atuin-server-database, atuin-server-postgres,
+atuin-server-sqlite, atuin-server, atuin-pty-proxy, atuin
+```
+
+For each crate, run from `crates/<name>`:
+```bash
+cargo publish --no-verify 2>&1
+```
+
+If it fails with "already uploaded", report it as a skip (not an error) —
+some crates like `atuin-nucleo` are versioned independently and may
+already be published at their current version.
+
+If it fails for any other reason, stop and report the error.
+
+---
+
+## Completion
+
+Summarize what was done:
+- Version released
+- PR URL
+- Tag name
+- Which crates were published (if any)
+- Working directory path and how to clean it up (`rm -rf`)

reference/atuin-18.16.1/.cargo/audit.toml

@@ -0,0 +1,9 @@
+[advisories]
+ignore = [
+  # This is a vuln on RSA. RSA is in our lockfile, but not in cargo-tree. 
+  # It is a issue with sqlx/cargo, and does not affect Atuin.
+  # See:
+  # - https://github.com/launchbadge/sqlx/issues/3211
+  # - https://github.com/rust-lang/cargo/issues/10801
+  "RUSTSEC-2023-0071"
+]

reference/atuin-18.16.1/.claude/skills/hunk/SKILL.md

@@ -0,0 +1,154 @@
+---
+name: hunk-review
+description: Interacts with live Hunk diff review sessions via CLI. Inspects review focus, navigates files and hunks, reloads session contents, and adds inline review comments. Use when the user has a Hunk session running or wants to review diffs interactively.
+---
+
+# Hunk Review
+
+Hunk is an interactive terminal diff viewer. The TUI is for the user -- do NOT run `hunk diff`, `hunk show`, or other interactive commands directly. Use `hunk session *` CLI commands to inspect and control live sessions through the local daemon.
+
+If no session exists, ask the user to launch Hunk in their terminal first.
+
+## Workflow
+
+```text
+1. hunk session list                                    # find live sessions
+2. hunk session get --repo .                            # inspect path / repo / source
+3. hunk session review --repo . --json                  # inspect file/hunk structure first
+4. hunk session review --repo . --include-patch --json  # opt into raw diff text only when needed
+5. hunk session context --repo .                        # check current focus when needed
+6. hunk session navigate ...                            # move to the right place
+7. hunk session reload -- <command>                     # swap contents if needed
+8. hunk session comment add ...                         # leave one review note
+9. hunk session comment apply ...                       # apply many agent notes in one stdin batch
+```
+
+## Session selection
+
+Most session commands accept:
+
+- `--repo <path>` -- match the live session by its current loaded repo root (most common)
+- `<session-id>` -- match by exact ID (use when multiple sessions share a repo)
+- If only one session exists, it auto-resolves
+
+`reload` also supports:
+
+- `--session-path <path>` -- match the live Hunk window by its current working directory
+- `--source <path>` -- load the replacement `diff` / `show` command from a different directory
+
+Use `--source` only for advanced reloads where the live session you want to control is not already associated with the checkout you want to load next. For a normal worktree session, prefer selecting it directly with `--repo /path/to/worktree`.
+
+## Commands
+
+### Inspect
+
+```bash
+hunk session list [--json]
+hunk session get (--repo . | <id>) [--json]
+hunk session context (--repo . | <id>) [--json]
+hunk session review (--repo . | <id>) [--json] [--include-patch]
+```
+
+- `get` shows the session `Path`, `Repo`, and `Source`, which helps when choosing between `--repo` and `--session-path`
+- `Repo` is what `--repo` matches; `Path` is what `--session-path` matches
+- `review --json` returns file and hunk structure by default; add `--include-patch` only when a caller truly needs raw unified diff text
+
+### Navigate
+
+Absolute navigation requires `--file` and exactly one of `--hunk`, `--new-line`, or `--old-line`:
+
+```bash
+hunk session navigate --repo . --file src/App.tsx --hunk 2
+hunk session navigate --repo . --file src/App.tsx --new-line 372
+hunk session navigate --repo . --file src/App.tsx --old-line 355
+```
+
+Relative comment navigation jumps between annotated hunks and does not require `--file`:
+
+```bash
+hunk session navigate --repo . --next-comment
+hunk session navigate --repo . --prev-comment
+```
+
+- `--hunk <n>` is 1-based
+- `--new-line` / `--old-line` are 1-based line numbers on that diff side
+- Use either `--next-comment` or `--prev-comment`, not both
+
+### Reload
+
+Swaps the live session's contents. Pass a Hunk review command after `--`:
+
+```bash
+hunk session reload --repo . -- diff
+hunk session reload --repo . -- diff main...feature -- src/ui
+hunk session reload --repo . -- show HEAD~1
+hunk session reload --repo . -- show HEAD~1 -- README.md
+hunk session reload --repo /path/to/worktree -- diff
+hunk session reload --session-path /path/to/live-window --source /path/to/other-checkout -- diff
+```
+
+- Always include `--` before the nested Hunk command
+- `--repo` or `<session-id>` usually selects the session you want
+- `--source` is advanced: it does not select the session; it only changes where the replacement review command runs
+- If the live session is already showing the target worktree, prefer `hunk session reload --repo /path/to/worktree -- diff`
+- `--session-path` targets the live window when you need to keep session selection separate from reload source
+
+### Comments
+
+```bash
+hunk session comment add --repo . --file README.md --new-line 103 --summary "Tighten this wording" [--rationale "..."] [--author "agent"] [--focus]
+printf '%s\n' '{"comments":[{"filePath":"README.md","newLine":103,"summary":"Tighten this wording"}]}' | hunk session comment apply --repo . --stdin [--focus]
+hunk session comment list --repo . [--file README.md]
+hunk session comment rm --repo . <comment-id>
+hunk session comment clear --repo . --yes [--file README.md]
+```
+
+- `comment add` is best for one note; `comment apply` is best when an agent already has several notes ready
+- `comment add` requires `--file`, `--summary`, and exactly one of `--old-line` or `--new-line`
+- `comment apply` payload items require `filePath`, `summary`, and exactly one target such as `hunk`, `hunkNumber`, `oldLine`, or `newLine`
+- `comment apply` reads a JSON batch from stdin and validates the full batch before mutating the live session
+- Pass `--focus` when you want to jump to the new note or the first note in a batch
+- `comment list` and `comment clear` accept optional `--file`
+- Quote `--summary` and `--rationale` defensively in the shell
+
+## New files in working-tree reviews
+
+`hunk diff` includes untracked files by default. If the user wants tracked changes only, reload with `--exclude-untracked`:
+
+```bash
+hunk session reload --repo . -- diff --exclude-untracked
+```
+
+## Guiding a review
+
+The user may ask you to walk them through a changeset or review code using Hunk. Start with `hunk session review --json` to understand the file/hunk structure without inflating agent context, then use `--include-patch` only for the files you truly need to read in raw diff form. Use `context` and `navigate` to line up the user's current view before adding comments.
+
+Your role is to narrate: steer the user's view to what matters and leave comments that explain what they're looking at.
+
+Typical flow:
+
+1. Load the right content (`reload` if needed)
+2. Navigate to the first interesting file / hunk
+3. Add a comment explaining what's happening and why
+4. If you already have several notes ready, prefer one `comment apply` batch over many separate shell invocations
+5. Summarize when done
+
+Guidelines:
+
+- Work in the order that tells the clearest story, not necessarily file order
+- Navigate before commenting so the user sees the code you're discussing
+- Use `comment apply` for agent-generated batches and `comment add` for one-off notes
+- Use `--focus` sparingly when the note itself should actively steer the review
+- Keep comments focused: intent, structure, risks, or follow-ups
+- Don't comment on every hunk -- highlight what the user wouldn't spot themselves
+
+## Common errors
+
+- **"No visible diff file matches ..."** -- the file is not in the loaded review. Check `context`, then `reload` if needed.
+- **"No active Hunk sessions"** -- ask the user to open Hunk in their terminal.
+- **"Multiple active sessions match"** -- pass `<session-id>` explicitly.
+- **"No active Hunk session matches session path ..."** -- for advanced split-path reloads, verify the live window `Path` via `hunk session get` or `list`, then use `--session-path`.
+- **"Pass the replacement Hunk command after `--`"** -- include `--` before the nested `diff` / `show` command.
+- **"Pass --stdin to read batch comments from stdin JSON."** -- `comment apply` only reads its batch payload from stdin.
+- **"Specify exactly one navigation target"** -- pick one of `--hunk`, `--old-line`, or `--new-line`.
+- **"Specify either --next-comment or --prev-comment, not both."** -- choose one comment-navigation direction.

reference/atuin-18.16.1/.claude/skills/release/SKILL.md

@@ -0,0 +1,269 @@
+---
+name: release
+description: >
+  Orchestrate a multi-step Atuin CLI release — version bumping, changelog
+  generation, PR creation, tagging, and crates.io publishing. Invoke with
+  /release or /release <version>.
+disable-model-invocation: true
+argument-hint: [version]
+---
+
+# Atuin CLI Release
+
+You are orchestrating a release of the Atuin CLI. Follow the steps below
+**in order**, pausing at each checkpoint for user confirmation. Do not skip
+steps or combine them.
+
+## Current State
+
+- Workspace version: !`sed -n '/^\[workspace\.package\]/,/^\[/s/^version = "\(.*\)"/\1/p' Cargo.toml`
+- Latest tag: !`git describe --tags --abbrev=0 2>/dev/null || echo "none"`
+- Suggested next version: !`git-cliff --bumped-version 2>/dev/null | sed 's/^v//' || echo "(unknown)"`
+
+---
+
+## Step 1 — Check Dependencies
+
+Verify these tools are installed: `git`, `gsed`, `cargo`, `gh`, `git-cliff`.
+
+Use `command -v` for each. If any are missing, report which ones and stop.
+
+---
+
+## Step 2 — Determine Version
+
+The target version may be provided as `$ARGUMENTS`. If it's empty, use
+AskUserQuestion to ask for the new version (show the current state above
+for reference).
+
+After determining the version:
+- If it contains a `-` (e.g. `18.15.0-beta.1`), it is a **prerelease**.
+  Note this — it affects changelog and publish behavior later.
+- Show the user: `current → new` and whether it's a prerelease.
+- **Checkpoint:** Ask the user to confirm before proceeding.
+
+---
+
+## Step 3 — Set Up Working Directory
+
+Clone a fresh copy into a temp directory:
+
+```bash
+WORKDIR=$(mktemp -d)
+git clone git@github.com:atuinsh/atuin.git "$WORKDIR"
+```
+
+Print the working directory path so the user can find it if needed.
+All subsequent Bash commands run from `$WORKDIR`.
+
+---
+
+## Step 4 — Create Branch & Update Versions
+
+1. Create a release branch named after the version (no `v` prefix):
+   `git checkout -b <VERSION>`
+
+2. Replace the old version with the new one in all `Cargo.toml` files.
+   **Escape dots** in the old version so sed treats them literally:
+
+   ```bash
+   VERSION_PATTERN="${OLD_VERSION//./\\.}"
+   find . -type f -name 'Cargo.toml' -not -path './.git/*' \
+       -exec gsed -i "s/$VERSION_PATTERN/$NEW_VERSION/g" {} \;
+   ```
+
+3. Run `cargo check` to update `Cargo.lock`.
+
+4. Show `git diff --stat` and the version-related lines from the diff:
+   ```bash
+   git diff --unified=0 -- '*.toml' | grep -E '^\+.*version' | grep -v '^\+\+\+'
+   ```
+
+5. Verify the workspace version was actually updated by re-reading it
+   from `Cargo.toml`.
+
+6. **Checkpoint:** Show the diff summary and ask the user to confirm the
+   version changes look correct.
+
+---
+
+## Step 5 — Update Changelog
+
+The changelog strategy differs for prereleases vs stable releases:
+
+- **Prerelease:** Maintain a running `## [unreleased]` section containing
+  all changes since the last stable release. Use:
+  `git-cliff --unreleased --strip all`
+  (cliff.toml's `ignore_tags` already ignores beta/alpha tags, so
+  `--unreleased` spans back to the last stable release automatically.)
+
+- **Stable release:** Generate a versioned entry that replaces the
+  `[unreleased]` section. Use:
+  `git-cliff --unreleased --tag "v<VERSION>" --strip all`
+
+Then update `CHANGELOG.md`:
+
+1. If an existing `## [unreleased]` or `## [Unreleased]` section exists,
+   **remove it entirely** (the heading and all content up to the next
+   `## ` heading).
+
+2. Insert the new entry before the first existing `## ` version heading.
+
+3. **Checkpoint:** Read and display the new changelog entry to the user.
+   Ask if they want any edits. If so, make the requested changes using
+   the Edit tool. Repeat until they're satisfied.
+
+---
+
+## Step 6 — Commit & Push
+
+Stage all changes and commit:
+
+```
+chore(release): prepare for release <VERSION>
+```
+
+Push the branch with `--set-upstream origin`.
+
+---
+
+## Step 7 — Create PR & Wait for Merge
+
+### Create the PR
+
+Extract the changelog entry body (everything between the new `## ` heading
+and the next one) for the PR description.
+
+For prereleases, the heading to match is `## [unreleased]`.
+For stable releases, it's `## <VERSION>` (escape dots in the awk pattern).
+
+Create the PR:
+```bash
+gh pr create \
+    --title "chore(release): prepare for release <VERSION>" \
+    --body "<body with changelog>" \
+    --repo atuinsh/atuin
+```
+
+Show the PR URL to the user.
+
+### Wait for merge
+
+Start a **persistent Monitor** that polls the PR status every 30 seconds.
+The monitor script must:
+- **Only emit output** on meaningful state changes: all checks green, PR
+  merged, or PR closed. Silent polls keep the monitor quiet and avoid
+  flooding notifications.
+- Handle transient API errors gracefully (don't crash on a single failure)
+- Exit 0 on `MERGED`, exit 1 on `CLOSED`
+
+The rollup mixes two entry shapes: `CheckRun` entries use `status` +
+`conclusion`, while `StatusContext` entries use `state`. A check counts
+as "passing" when it's in a terminal state with a non-failing outcome.
+Treat `SUCCESS`, `SKIPPED`, and `NEUTRAL` as passing — some release
+workflows (e.g. `announce`, `build-global-artifacts`) are conditional
+and report `SKIPPED` on non-tag events, which is expected, not a
+failure.
+
+Example monitor script (substitute the actual PR number):
+```bash
+checks_passed=false
+while true; do
+  json=$(gh pr view PR_NUM --repo atuinsh/atuin --json state,statusCheckRollup 2>/dev/null) || { sleep 30; continue; }
+  state=$(echo "$json" | jq -r '.state')
+  case "$state" in
+    MERGED) echo "PR #PR_NUM has been merged!"; exit 0 ;;
+    CLOSED) echo "PR #PR_NUM was closed without merging."; exit 1 ;;
+  esac
+  # Only notify once when all checks reach a terminal passing state.
+  # CheckRun entries carry `status`/`conclusion`; StatusContext entries
+  # carry `state`. SKIPPED and NEUTRAL count as passing.
+  if [ "$checks_passed" = false ]; then
+    counts=$(echo "$json" | jq -r '
+      [.statusCheckRollup[]?] as $all
+      | ($all | map(select(
+          (.status == "COMPLETED" and (.conclusion | IN("SUCCESS","SKIPPED","NEUTRAL")))
+          or .state == "SUCCESS"
+        )) | length) as $passing
+      | ($all | map(select(
+          (.status == "COMPLETED" and (.conclusion | IN("FAILURE","TIMED_OUT","CANCELLED","ACTION_REQUIRED","STALE")))
+          or (.state | IN("FAILURE","ERROR"))
+        )) | length) as $failing
+      | "\($all | length) \($passing) \($failing)"
+    ' 2>/dev/null)
+    read -r total passing failing <<<"$counts"
+    if [ "${failing:-0}" -gt 0 ] 2>/dev/null; then
+      echo "PR #PR_NUM has $failing failing check(s) — investigate before merging."
+      checks_passed=true  # don't re-notify
+    elif [ "${total:-0}" -gt 0 ] 2>/dev/null && [ "$total" = "$passing" ]; then
+      echo "All $total checks passed on PR #PR_NUM — ready to merge!"
+      checks_passed=true
+    fi
+  fi
+  sleep 30
+done
+```
+
+Tell the user to go review and merge the PR. While the monitor runs, you
+can respond to other questions — the monitor notifications will arrive
+asynchronously.
+
+When the monitor reports `MERGED`, proceed to the next step.
+If it reports `CLOSED`, inform the user and stop the release.
+
+---
+
+## Step 8 — Tag Release
+
+Back in the working directory:
+
+```bash
+git checkout main
+git pull
+git tag "v<VERSION>"
+git push --tags
+```
+
+Tell the user the tag was pushed and the release CI workflow has been
+triggered.
+
+---
+
+## Step 9 — Publish to crates.io
+
+**If this is a prerelease**, skip this step entirely and tell the user.
+
+**If this is a stable release**, ask the user whether to publish.
+
+If yes, publish each crate **in dependency order** using `--no-verify`
+(the code already passed CI, and verification fails when crates.io
+hasn't indexed a freshly-published dependency yet):
+
+```
+atuin-common, atuin-client, atuin-ai, atuin-dotfiles, atuin-history,
+atuin-nucleo/matcher, atuin-nucleo, atuin-daemon, atuin-kv,
+atuin-scripts, atuin-server-database, atuin-server-postgres,
+atuin-server-sqlite, atuin-server, atuin-pty-proxy, atuin
+```
+
+For each crate, run from `crates/<name>`:
+```bash
+cargo publish --no-verify 2>&1
+```
+
+If it fails with "already uploaded", report it as a skip (not an error) —
+some crates like `atuin-nucleo` are versioned independently and may
+already be published at their current version.
+
+If it fails for any other reason, stop and report the error.
+
+---
+
+## Completion
+
+Summarize what was done:
+- Version released
+- PR URL
+- Tag name
+- Which crates were published (if any)
+- Working directory path and how to clean it up (`rm -rf`)

reference/atuin-18.16.1/.codespellrc

@@ -0,0 +1,7 @@
+[codespell]
+# Ref: https://github.com/codespell-project/codespell#using-a-config-file
+skip = .git*,*.lock,.codespellrc,CODE_OF_CONDUCT.md,CONTRIBUTORS
+check-hidden = true
+# ignore-regex = 
+ignore-words-list = crate,ratatui,inbetween,iterm,fo,brunch
+

reference/atuin-18.16.1/.depot/workflows/codespell.yml

@@ -0,0 +1,28 @@
+# Depot CI Migration
+# Source: .github/workflows/codespell.yml
+#
+# No changes were necessary.
+
+# Codespell configuration is within .codespellrc
+name: Codespell
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+permissions:
+  contents: read
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2
+        with:
+          # This is regenerated from commit history
+          # we cannot rewrite commit history, and I'd rather not correct it
+          # every time
+          exclude_file: CHANGELOG.md

reference/atuin-18.16.1/.depot/workflows/installer.yml

@@ -0,0 +1,36 @@
+# Depot CI Migration
+# Source: .github/workflows/installer.yml
+#
+# No changes were necessary.
+
+name: Install
+on:
+  push:
+    branches: [main]
+  pull_request:
+    paths: .github/workflows/installer.yml
+env:
+  CARGO_TERM_COLOR: always
+jobs:
+  install:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install zsh for ubuntu
+        if: matrix.os == 'depot-ubuntu-24.04'
+        run: |
+          sudo apt install zsh
+      - name: Test install script on bash
+        run: |
+          /bin/bash -c "$(curl --proto '=https' --tlsv1.2 -sSf https://setup.atuin.sh)"
+          [ -d "$HOME/.atuin" ] && source $HOME/.atuin/bin/env
+          atuin --help
+      - name: Test install script on zsh
+        shell: zsh {0}
+        run: |
+          /bin/bash -c "$(curl --proto '=https' --tlsv1.2 -sSf https://setup.atuin.sh)"
+          [ -d "$HOME/.atuin" ] && source $HOME/.atuin/bin/env
+          atuin --help

reference/atuin-18.16.1/.depot/workflows/nix.yml

@@ -0,0 +1,33 @@
+# Depot CI Migration
+# Source: .github/workflows/nix.yml
+#
+# No changes were necessary.
+
+# Verify the Nix build is working
+# Failures will usually occur due to an out of date Rust version
+# That can be updated to the latest version in nixpkgs-unstable with `nix flake update`
+name: Nix
+on:
+  push:
+    branches: [main]
+    paths-ignore:
+      - 'ui/**'
+  pull_request:
+    branches: [main]
+    paths-ignore:
+      - 'ui/**'
+jobs:
+  check:
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - uses: cachix/install-nix-action@v31
+      - name: Run nix flake check
+        run: nix flake check --print-build-logs
+  build-test:
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - uses: cachix/install-nix-action@v31
+      - name: Run nix build
+        run: nix build --print-build-logs

reference/atuin-18.16.1/.depot/workflows/rust.yml

@@ -0,0 +1,187 @@
+# Depot CI Migration
+# Source: .github/workflows/rust.yml
+#
+# No changes were necessary.
+
+name: Rust
+on:
+  push:
+    branches: [main]
+    paths-ignore:
+      - "ui/**"
+  pull_request:
+    branches: [main]
+    paths-ignore:
+      - "ui/**"
+env:
+  CARGO_TERM_COLOR: always
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ runner.os }}-cargo-release-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run cargo build common
+        run: cargo build -p atuin-common --locked --release
+      - name: Run cargo build client
+        run: cargo build -p atuin-client --locked --release
+      - name: Run cargo build server
+        run: cargo build -p atuin-server --locked --release
+      - name: Run cargo build main
+        run: cargo build --all --locked --release
+  cross-compile:
+    strategy:
+      matrix:
+        # There was an attempt to make cross-compiles also work on FreeBSD, but that failed with:
+        #
+        # warning: libelf.so.2, needed by <...>/libkvm.so, not found (try using -rpath or -rpath-link)
+        target: [x86_64-unknown-illumos]
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install cross
+        uses: taiki-e/install-action@v2
+        with:
+          tool: cross
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ matrix.target }}-cross-compile-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run cross build common
+        run: cross build -p atuin-common --locked --target ${{ matrix.target }}
+      - name: Run cross build client
+        run: cross build -p atuin-client --locked --target ${{ matrix.target }}
+      - name: Run cross build server
+        run: cross build -p atuin-server --locked --target ${{ matrix.target }}
+      - name: Run cross build main
+        run: |
+          cross build --all --locked --target ${{ matrix.target }}
+  unit-test:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+      - uses: taiki-e/install-action@v2
+        name: Install nextest
+        with:
+          tool: cargo-nextest
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run cargo test
+        run: cargo nextest run --lib --bins
+  check:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run cargo check (all features)
+        run: cargo check --all-features --workspace
+      - name: Run cargo check (no features)
+        run: cargo check --no-default-features --workspace
+      - name: Run cargo check (sync)
+        run: cargo check --no-default-features --features sync --workspace
+      - name: Run cargo check (server)
+        run: cargo check -p atuin-server
+      - name: Run cargo check (client only)
+        run: cargo check --no-default-features --features client --workspace
+  integration-test:
+    runs-on: depot-ubuntu-24.04
+    services:
+      postgres:
+        image: postgres
+        env:
+          POSTGRES_USER: atuin
+          POSTGRES_PASSWORD: pass
+          POSTGRES_DB: atuin
+        ports:
+          - 5432:5432
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+      - uses: taiki-e/install-action@v2
+        name: Install nextest
+        with:
+          tool: cargo-nextest
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run cargo test
+        run: cargo nextest run --test '*'
+        env:
+          ATUIN_DB_URI: postgres://atuin:pass@localhost:5432/atuin
+  clippy:
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install latest rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+          components: clippy
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+      - name: Run clippy
+        run: cargo clippy -- -D warnings -D clippy::redundant_clone
+  format:
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - name: Install latest rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.94.0
+          components: rustfmt
+      - name: Format
+        run: cargo fmt -- --check

reference/atuin-18.16.1/.depot/workflows/shellcheck.yml

@@ -0,0 +1,20 @@
+# Depot CI Migration
+# Source: .github/workflows/shellcheck.yml
+#
+# No changes were necessary.
+
+name: Shellcheck
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+jobs:
+  shellcheck:
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+      - name: Run shellcheck
+        uses: ludeeus/action-shellcheck@master
+        env:
+          SHELLCHECK_OPTS: "-e SC2148"

reference/atuin-18.16.1/.depot/workflows/update-nix-deps.yml

@@ -0,0 +1,25 @@
+# Depot CI Migration
+# Source: .github/workflows/update-nix-deps.yml
+#
+# No changes were necessary.
+
+name: Update Nix Deps
+on:
+  workflow_dispatch: # allows manual triggering
+  schedule:
+    - cron: '0 0 1 * *' # runs monthly on the first day of the month at 00:00
+jobs:
+  lockfile:
+    runs-on: depot-ubuntu-24.04
+    if: github.repository == 'atuinsh/atuin'
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v6
+      - name: Install Nix
+        uses: DeterminateSystems/nix-installer-action@main
+      - name: Update flake.lock
+        uses: DeterminateSystems/update-flake-lock@main
+        with:
+          pr-title: "chore(deps): update flake.lock"
+          pr-labels: |
+            dependencies

reference/atuin-18.16.1/.dockerignore

@@ -0,0 +1,2 @@
+./target
+Dockerfile

reference/atuin-18.16.1/.gitattributes

@@ -0,0 +1,5 @@
+*.sh eol=lf
+*.nix eol=lf
+*.zsh eol=lf
+
+*.sql eol=lf

reference/atuin-18.16.1/.github/DISCUSSION_TEMPLATE/support.yml

@@ -0,0 +1,84 @@
+body:
+  - type: input
+    attributes:
+      label: Operating System
+      description: What operating system are you using?
+      placeholder: "Example: macOS Big Sur"
+    validations:
+      required: true
+
+  - type: input
+    attributes:
+      label: Shell
+      description: What shell are you using?
+      placeholder: "Example: zsh 5.8.1"
+    validations:
+      required: true
+
+  - type: dropdown
+    attributes:
+      label: Version
+      description: What version of atuin are you running?
+      multiple: false
+      options: # how often will I forget to update this? a lot.
+        - v17.0.0 (Default)
+        - v16.0.0
+        - v15.0.0
+        - v14.0.1
+        - v14.0.0
+        - v13.0.1
+        - v13.0.0
+        - v12.0.0
+        - v11.0.0
+        - v0.10.0
+        - v0.9.1
+        - v0.9.0
+        - v0.8.1
+        - v0.8.0
+        - v0.7.2
+        - v0.7.1
+        - v0.7.0
+        - v0.6.4
+        - v0.6.3
+      default: 0
+    validations:
+      required: true
+
+  - type: checkboxes
+    attributes:
+      label: Self hosted
+      description: Are you self hosting atuin server?
+      options:
+        - label: I am self hosting atuin server
+
+  - type: checkboxes
+    attributes:
+      label: Search the issues
+      description: Did you search the issues and discussions for your problem?
+      options:
+        - label: I checked that someone hasn't already asked about the same issue
+          required: true
+
+  - type: textarea
+    attributes:
+      label: Behaviour
+      description: "Please describe the issue - what you expected to happen, what actually happened"
+      
+  - type: textarea
+    attributes:
+      label: Logs
+      description: "If possible, please include logs from atuin, especially if you self host the server - ATUIN_LOG=debug"
+
+  - type: textarea
+    attributes:
+      label: Extra information
+      description: "Anything else you'd like to add?"
+
+  - type: checkboxes
+    attributes:
+      label: Code of Conduct
+      description: The Code of Conduct helps create a safe space for everyone. We require
+        that everyone agrees to it.
+      options:
+        - label: I agree to follow this project's [Code of Conduct](https://github.com/atuinsh/atuin/blob/main/CODE_OF_CONDUCT.md)
+          required: true

reference/atuin-18.16.1/.github/FUNDING.yml

@@ -0,0 +1,13 @@
+# These are supported funding model platforms
+
+github: [atuinsh]
+patreon: # Replace with a single Patreon username
+open_collective: # Replace with a single Open Collective username
+ko_fi: # Replace with a single Ko-fi username
+tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel
+community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry
+liberapay: # Replace with a single Liberapay username
+issuehunt: # Replace with a single IssueHunt username
+otechie: # Replace with a single Otechie username
+lfx_crowdfunding: # Replace with a single LFX Crowdfunding project-name e.g., cloud-foundry
+custom: # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2']

reference/atuin-18.16.1/.github/ISSUE_TEMPLATE/bug.yaml

@@ -0,0 +1,39 @@
+name: Bug Report
+description: File a bug report
+title: "[Bug]: "
+labels: ["bug", "triage"]
+body:
+  - type: markdown
+    attributes:
+      value: |
+        Thanks for taking the time to fill out this bug report!
+  - type: textarea
+    id: what-expected
+    attributes:
+      label: What did you expect to happen?
+      placeholder: Tell us what you expected to see!
+    validations:
+      required: true
+  - type: textarea
+    id: what-happened
+    attributes:
+      label: What happened?
+      placeholder: Tell us what you see!
+    validations:
+      required: true
+  - type: textarea
+    id: doctor
+    validations:
+      required: true
+    attributes:
+      label: Atuin doctor output
+      description: Please run 'atuin doctor' and share the output. If it fails to run, share any errors. This requires Atuin >=v18.1.0
+      render: yaml
+  - type: checkboxes
+    id: terms
+    attributes:
+      label: Code of Conduct
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/atuinsh/atuin/blob/main/CODE_OF_CONDUCT.md)
+      options:
+        - label: I agree to follow this project's Code of Conduct
+          required: true

reference/atuin-18.16.1/.github/dependabot.yml

@@ -0,0 +1,19 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://help.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "cargo" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "docker" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

reference/atuin-18.16.1/.github/pull_request_template.md

@@ -0,0 +1,5 @@
+<!-- Thank you for making a PR! Bug fixes are always welcome, but if you're adding a new feature or changing an existing one, we'd really appreciate if you open an issue, post on the forum, or drop in on Discord -->
+
+## Checks
+- [ ] I am happy for maintainers to push small adjustments to this PR, to speed up the review cycle
+- [ ] I have checked that there are no existing pull requests for the same thing

reference/atuin-18.16.1/.github/workflows/codespell.yml

@@ -0,0 +1,28 @@
+# Codespell configuration is within .codespellrc
+---
+name: Codespell
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2
+        with:
+          # This is regenerated from commit history
+          # we cannot rewrite commit history, and I'd rather not correct it
+          # every time
+          exclude_file: CHANGELOG.md

reference/atuin-18.16.1/.github/workflows/docker.yaml

@@ -0,0 +1,61 @@
+name: build-docker
+
+on:
+  push:
+    branches: [main]
+    tags:
+      - 'v*'
+
+jobs:
+  publish:
+    concurrency:
+      group: ${{ github.ref }}-docker
+      cancel-in-progress: true
+    permissions:
+      packages: write
+      contents: read
+      id-token: write
+
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Get Repo Owner
+        id: get_repo_owner
+        run: echo "REPO_OWNER=$(echo ${{ github.repository_owner }} | tr '[:upper:]' '[:lower:]')" > $GITHUB_ENV
+
+      - uses: depot/setup-action@v1
+
+      - name: Login to container Registry
+        uses: docker/login-action@v3
+        with:
+          username: ${{ github.repository_owner }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+          registry: ghcr.io
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ghcr.io/${{ env.REPO_OWNER }}/atuin
+          flavor: |
+            latest=false
+          tags: |
+            type=ref,event=branch
+            type=sha,prefix=
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+
+      - name: Build and push
+        uses: depot/build-push-action@v1
+        with:
+          push: true
+          platforms: linux/amd64,linux/arm64
+          file: ./Dockerfile
+          context: .
+          provenance: false
+          build-args: |
+            Version=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.version'] || 'dev' }}
+            GitCommit=${{ github.sha }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}

reference/atuin-18.16.1/.github/workflows/installer.yml

@@ -0,0 +1,38 @@
+name: Install
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    paths: .github/workflows/installer.yml
+
+env:
+  CARGO_TERM_COLOR: always
+
+jobs:
+  install:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install zsh for ubuntu
+        if: matrix.os == 'depot-ubuntu-24.04' 
+        run: | 
+          sudo apt install zsh
+
+      - name: Test install script on bash
+        run: | 
+          /bin/bash -c "$(curl --proto '=https' --tlsv1.2 -sSf https://setup.atuin.sh)"
+          [ -d "$HOME/.atuin" ] && source $HOME/.atuin/bin/env
+          atuin --help
+
+      - name: Test install script on zsh
+        shell: zsh {0}
+        run: | 
+          /bin/bash -c "$(curl --proto '=https' --tlsv1.2 -sSf https://setup.atuin.sh)"
+          [ -d "$HOME/.atuin" ] && source $HOME/.atuin/bin/env
+          atuin --help

reference/atuin-18.16.1/.github/workflows/nix.yml

@@ -0,0 +1,34 @@
+# Verify the Nix build is working
+# Failures will usually occur due to an out of date Rust version
+# That can be updated to the latest version in nixpkgs-unstable with `nix flake update`
+name: Nix
+on:
+  push:
+    branches: [ main ]
+    paths-ignore:
+      - 'ui/**'
+  pull_request:
+    branches: [ main ]
+    paths-ignore:
+      - 'ui/**'
+
+jobs:
+  check:
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+      - uses: actions/checkout@v6
+      - uses: cachix/install-nix-action@v31
+
+      - name: Run nix flake check
+        run: nix flake check --print-build-logs
+
+  build-test:
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+      - uses: actions/checkout@v6
+      - uses: cachix/install-nix-action@v31
+
+      - name: Run nix build
+        run: nix build --print-build-logs

reference/atuin-18.16.1/.github/workflows/release.yml

@@ -0,0 +1,304 @@
+# This file was autogenerated by dist: https://axodotdev.github.io/cargo-dist
+#
+# Copyright 2022-2024, axodotdev
+# SPDX-License-Identifier: MIT or Apache-2.0
+#
+# CI that:
+#
+# * checks for a Git Tag that looks like a release
+# * builds artifacts with dist (archives, installers, hashes)
+# * uploads those artifacts to temporary workflow zip
+# * on success, uploads the artifacts to a GitHub Release
+#
+# Note that the GitHub Release will be created with a generated
+# title/body based on your changelogs.
+
+name: Release
+permissions:
+  "contents": "write"
+
+# This task will run whenever you push a git tag that looks like a version
+# like "1.0.0", "v0.1.0-prerelease.1", "my-app/0.1.0", "releases/v1.0.0", etc.
+# Various formats will be parsed into a VERSION and an optional PACKAGE_NAME, where
+# PACKAGE_NAME must be the name of a Cargo package in your workspace, and VERSION
+# must be a Cargo-style SemVer Version (must have at least major.minor.patch).
+#
+# If PACKAGE_NAME is specified, then the announcement will be for that
+# package (erroring out if it doesn't have the given version or isn't dist-able).
+#
+# If PACKAGE_NAME isn't specified, then the announcement will be for all
+# (dist-able) packages in the workspace with that version (this mode is
+# intended for workspaces with only one dist-able package, or with all dist-able
+# packages versioned/released in lockstep).
+#
+# If you push multiple tags at once, separate instances of this workflow will
+# spin up, creating an independent announcement for each one. However, GitHub
+# will hard limit this to 3 tags per commit, as it will assume more tags is a
+# mistake.
+#
+# If there's a prerelease-style suffix to the version, then the release(s)
+# will be marked as a prerelease.
+on:
+  pull_request:
+  push:
+    tags:
+      - '**[0-9]+.[0-9]+.[0-9]+*'
+
+jobs:
+  # Run 'dist plan' (or host) to determine what tasks we need to do
+  plan:
+    runs-on: "ubuntu-22.04"
+    outputs:
+      val: ${{ steps.plan.outputs.manifest }}
+      tag: ${{ !github.event.pull_request && github.ref_name || '' }}
+      tag-flag: ${{ !github.event.pull_request && format('--tag={0}', github.ref_name) || '' }}
+      publishing: ${{ !github.event.pull_request }}
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          persist-credentials: false
+          submodules: recursive
+      - name: Install dist
+        # we specify bash to get pipefail; it guards against the `curl` command
+        # failing. otherwise `sh` won't catch that `curl` returned non-0
+        shell: bash
+        run: "curl --proto '=https' --tlsv1.2 -LsSf https://github.com/axodotdev/cargo-dist/releases/download/v0.31.0/cargo-dist-installer.sh | sh"
+      - name: Cache dist
+        uses: actions/upload-artifact@v6
+        with:
+          name: cargo-dist-cache
+          path: ~/.cargo/bin/dist
+      # sure would be cool if github gave us proper conditionals...
+      # so here's a doubly-nested ternary-via-truthiness to try to provide the best possible
+      # functionality based on whether this is a pull_request, and whether it's from a fork.
+      # (PRs run on the *source* but secrets are usually on the *target* -- that's *good*
+      # but also really annoying to build CI around when it needs secrets to work right.)
+      - id: plan
+        run: |
+          dist ${{ (!github.event.pull_request && format('host --steps=create --tag={0}', github.ref_name)) || 'plan' }} --output-format=json > plan-dist-manifest.json
+          echo "dist ran successfully"
+          cat plan-dist-manifest.json
+          echo "manifest=$(jq -c "." plan-dist-manifest.json)" >> "$GITHUB_OUTPUT"
+      - name: "Upload dist-manifest.json"
+        uses: actions/upload-artifact@v6
+        with:
+          name: artifacts-plan-dist-manifest
+          path: plan-dist-manifest.json
+
+  # Build and packages all the platform-specific things
+  build-local-artifacts:
+    name: build-local-artifacts (${{ join(matrix.targets, ', ') }})
+    # Let the initial task tell us to not run (currently very blunt)
+    needs:
+      - plan
+    if: ${{ fromJson(needs.plan.outputs.val).ci.github.artifacts_matrix.include != null && (needs.plan.outputs.publishing == 'true' || fromJson(needs.plan.outputs.val).ci.github.pr_run_mode == 'upload') }}
+    strategy:
+      fail-fast: false
+      # Target platforms/runners are computed by dist in create-release.
+      # Each member of the matrix has the following arguments:
+      #
+      # - runner: the github runner
+      # - dist-args: cli flags to pass to dist
+      # - install-dist: expression to run to install dist on the runner
+      #
+      # Typically there will be:
+      # - 1 "global" task that builds universal installers
+      # - N "local" tasks that build each platform's binaries and platform-specific installers
+      matrix: ${{ fromJson(needs.plan.outputs.val).ci.github.artifacts_matrix }}
+    runs-on: ${{ matrix.runner }}
+    container: ${{ matrix.container && matrix.container.image || null }}
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      BUILD_MANIFEST_NAME: target/distrib/${{ join(matrix.targets, '-') }}-dist-manifest.json
+    permissions:
+      "attestations": "write"
+      "contents": "read"
+      "id-token": "write"
+    steps:
+      - name: enable windows longpaths
+        run: |
+          git config --global core.longpaths true
+      - uses: actions/checkout@v6
+        with:
+          persist-credentials: false
+          submodules: recursive
+      - name: Install Rust non-interactively if not already installed
+        if: ${{ matrix.container }}
+        run: |
+          if ! command -v cargo > /dev/null 2>&1; then
+            curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
+            echo "$HOME/.cargo/bin" >> $GITHUB_PATH
+          fi
+      - name: Install dist
+        run: ${{ matrix.install_dist.run }}
+      # Get the dist-manifest
+      - name: Fetch local artifacts
+        uses: actions/download-artifact@v7
+        with:
+          pattern: artifacts-*
+          path: target/distrib/
+          merge-multiple: true
+      - name: Install dependencies
+        run: |
+          ${{ matrix.packages_install }}
+      - name: Build artifacts
+        run: |
+          # Actually do builds and make zips and whatnot
+          dist build ${{ needs.plan.outputs.tag-flag }} --print=linkage --output-format=json ${{ matrix.dist_args }} > dist-manifest.json
+          echo "dist ran successfully"
+      - name: Attest
+        uses: actions/attest-build-provenance@v3
+        with:
+          subject-path: "target/distrib/*${{ join(matrix.targets, ', ') }}*"
+      - id: cargo-dist
+        name: Post-build
+        # We force bash here just because github makes it really hard to get values up
+        # to "real" actions without writing to env-vars, and writing to env-vars has
+        # inconsistent syntax between shell and powershell.
+        shell: bash
+        run: |
+          # Parse out what we just built and upload it to scratch storage
+          echo "paths<<EOF" >> "$GITHUB_OUTPUT"
+          dist print-upload-files-from-manifest --manifest dist-manifest.json >> "$GITHUB_OUTPUT"
+          echo "EOF" >> "$GITHUB_OUTPUT"
+
+          cp dist-manifest.json "$BUILD_MANIFEST_NAME"
+      - name: "Upload artifacts"
+        uses: actions/upload-artifact@v6
+        with:
+          name: artifacts-build-local-${{ join(matrix.targets, '_') }}
+          path: |
+            ${{ steps.cargo-dist.outputs.paths }}
+            ${{ env.BUILD_MANIFEST_NAME }}
+
+  # Build and package all the platform-agnostic(ish) things
+  build-global-artifacts:
+    needs:
+      - plan
+      - build-local-artifacts
+    runs-on: "ubuntu-22.04"
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      BUILD_MANIFEST_NAME: target/distrib/global-dist-manifest.json
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          persist-credentials: false
+          submodules: recursive
+      - name: Install cached dist
+        uses: actions/download-artifact@v7
+        with:
+          name: cargo-dist-cache
+          path: ~/.cargo/bin/
+      - run: chmod +x ~/.cargo/bin/dist
+      # Get all the local artifacts for the global tasks to use (for e.g. checksums)
+      - name: Fetch local artifacts
+        uses: actions/download-artifact@v7
+        with:
+          pattern: artifacts-*
+          path: target/distrib/
+          merge-multiple: true
+      - id: cargo-dist
+        shell: bash
+        run: |
+          dist build ${{ needs.plan.outputs.tag-flag }} --output-format=json "--artifacts=global" > dist-manifest.json
+          echo "dist ran successfully"
+
+          # Parse out what we just built and upload it to scratch storage
+          echo "paths<<EOF" >> "$GITHUB_OUTPUT"
+          jq --raw-output ".upload_files[]" dist-manifest.json >> "$GITHUB_OUTPUT"
+          echo "EOF" >> "$GITHUB_OUTPUT"
+
+          cp dist-manifest.json "$BUILD_MANIFEST_NAME"
+      - name: "Upload artifacts"
+        uses: actions/upload-artifact@v6
+        with:
+          name: artifacts-build-global
+          path: |
+            ${{ steps.cargo-dist.outputs.paths }}
+            ${{ env.BUILD_MANIFEST_NAME }}
+  # Determines if we should publish/announce
+  host:
+    needs:
+      - plan
+      - build-local-artifacts
+      - build-global-artifacts
+    # Only run if we're "publishing", and only if plan, local and global didn't fail (skipped is fine)
+    if: ${{ always() && needs.plan.result == 'success' && needs.plan.outputs.publishing == 'true' && (needs.build-global-artifacts.result == 'skipped' || needs.build-global-artifacts.result == 'success') && (needs.build-local-artifacts.result == 'skipped' || needs.build-local-artifacts.result == 'success') }}
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+    runs-on: "ubuntu-22.04"
+    outputs:
+      val: ${{ steps.host.outputs.manifest }}
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          persist-credentials: false
+          submodules: recursive
+      - name: Install cached dist
+        uses: actions/download-artifact@v7
+        with:
+          name: cargo-dist-cache
+          path: ~/.cargo/bin/
+      - run: chmod +x ~/.cargo/bin/dist
+      # Fetch artifacts from scratch-storage
+      - name: Fetch artifacts
+        uses: actions/download-artifact@v7
+        with:
+          pattern: artifacts-*
+          path: target/distrib/
+          merge-multiple: true
+      - id: host
+        shell: bash
+        run: |
+          dist host ${{ needs.plan.outputs.tag-flag }} --steps=upload --steps=release --output-format=json > dist-manifest.json
+          echo "artifacts uploaded and released successfully"
+          cat dist-manifest.json
+          echo "manifest=$(jq -c "." dist-manifest.json)" >> "$GITHUB_OUTPUT"
+      - name: "Upload dist-manifest.json"
+        uses: actions/upload-artifact@v6
+        with:
+          # Overwrite the previous copy
+          name: artifacts-dist-manifest
+          path: dist-manifest.json
+      # Create a GitHub Release while uploading all files to it
+      - name: "Download GitHub Artifacts"
+        uses: actions/download-artifact@v7
+        with:
+          pattern: artifacts-*
+          path: artifacts
+          merge-multiple: true
+      - name: Cleanup
+        run: |
+          # Remove the granular manifests
+          rm -f artifacts/*-dist-manifest.json
+      - name: Create GitHub Release
+        env:
+          PRERELEASE_FLAG: "${{ fromJson(steps.host.outputs.manifest).announcement_is_prerelease && '--prerelease' || '' }}"
+          ANNOUNCEMENT_TITLE: "${{ fromJson(steps.host.outputs.manifest).announcement_title }}"
+          ANNOUNCEMENT_BODY: "${{ fromJson(steps.host.outputs.manifest).announcement_github_body }}"
+          RELEASE_COMMIT: "${{ github.sha }}"
+        run: |
+          # Write and read notes from a file to avoid quoting breaking things
+          echo "$ANNOUNCEMENT_BODY" > $RUNNER_TEMP/notes.txt
+
+          gh release create "${{ needs.plan.outputs.tag }}" --target "$RELEASE_COMMIT" $PRERELEASE_FLAG --title "$ANNOUNCEMENT_TITLE" --notes-file "$RUNNER_TEMP/notes.txt" artifacts/*
+
+  announce:
+    needs:
+      - plan
+      - host
+    # use "always() && ..." to allow us to wait for all publish jobs while
+    # still allowing individual publish jobs to skip themselves (for prereleases).
+    # "host" however must run to completion, no skipping allowed!
+    if: ${{ always() && needs.host.result == 'success' }}
+    runs-on: "ubuntu-22.04"
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          persist-credentials: false
+          submodules: recursive

reference/atuin-18.16.1/.github/workflows/rust.yml

@@ -0,0 +1,230 @@
+name: Rust
+
+on:
+  push:
+    branches: [main]
+    paths-ignore:
+      - "ui/**"
+  pull_request:
+    branches: [main]
+    paths-ignore:
+      - "ui/**"
+
+env:
+  CARGO_TERM_COLOR: always
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ runner.os }}-cargo-release-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run cargo build common
+        run: cargo build -p atuin-common --locked --release
+
+      - name: Run cargo build client
+        run: cargo build -p atuin-client --locked --release
+
+      - name: Run cargo build server
+        run: cargo build -p atuin-server --locked --release
+
+      - name: Run cargo build main
+        run: cargo build --all --locked --release
+
+  cross-compile:
+    strategy:
+      matrix:
+        # There was an attempt to make cross-compiles also work on FreeBSD, but that failed with:
+        #
+        # warning: libelf.so.2, needed by <...>/libkvm.so, not found (try using -rpath or -rpath-link)
+        target: [x86_64-unknown-illumos]
+    runs-on: depot-ubuntu-24.04
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install cross
+        uses: taiki-e/install-action@v2
+        with:
+          tool: cross
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ matrix.target }}-cross-compile-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run cross build common
+        run: cross build -p atuin-common --locked --target ${{ matrix.target }}
+
+      - name: Run cross build client
+        run: cross build -p atuin-client --locked --target ${{ matrix.target }}
+
+      - name: Run cross build server
+        run: cross build -p atuin-server --locked --target ${{ matrix.target }}
+
+      - name: Run cross build main
+        run: |
+          cross build --all --locked --target ${{ matrix.target }}
+
+  unit-test:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+
+      - uses: taiki-e/install-action@v2
+        name: Install nextest
+        with:
+          tool: cargo-nextest
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run cargo test
+        run: cargo nextest run --lib --bins
+
+  check:
+    strategy:
+      matrix:
+        os: [depot-ubuntu-24.04, macos-14, windows-latest]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run cargo check (all features)
+        run: cargo check --all-features --workspace
+
+      - name: Run cargo check (no features)
+        run: cargo check --no-default-features --workspace
+
+      - name: Run cargo check (sync)
+        run: cargo check --no-default-features --features sync --workspace
+
+      - name: Run cargo check (server)
+        run: cargo check -p atuin-server
+
+      - name: Run cargo check (client only)
+        run: cargo check --no-default-features --features client --workspace
+
+  integration-test:
+    runs-on: depot-ubuntu-24.04
+
+    services:
+      postgres:
+        image: postgres
+        env:
+          POSTGRES_USER: atuin
+          POSTGRES_PASSWORD: pass
+          POSTGRES_DB: atuin
+        ports:
+          - 5432:5432
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+
+      - uses: taiki-e/install-action@v2
+        name: Install nextest
+        with:
+          tool: cargo-nextest
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+             ~/.cargo/git
+             target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run cargo test
+        run: cargo nextest run --test '*'
+        env:
+          ATUIN_DB_URI: postgres://atuin:pass@localhost:5432/atuin
+
+  clippy:
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install latest rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+          components: clippy
+
+      - uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            target
+          key: ${{ runner.os }}-cargo-debug-${{ hashFiles('**/Cargo.lock') }}
+
+      - name: Run clippy
+        run: cargo clippy -- -D warnings -D clippy::redundant_clone
+
+  format:
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install latest rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 1.95.0
+          components: rustfmt
+
+      - name: Format
+        run: cargo fmt -- --check

reference/atuin-18.16.1/.github/workflows/shellcheck.yml

@@ -0,0 +1,18 @@
+name: Shellcheck
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  shellcheck:
+    runs-on: depot-ubuntu-24.04
+
+    steps:
+    - uses: actions/checkout@v6
+    - name: Run shellcheck
+      uses: ludeeus/action-shellcheck@master
+      env:
+        SHELLCHECK_OPTS: "-e SC2148"

reference/atuin-18.16.1/.github/workflows/update-nix-deps.yml

@@ -0,0 +1,21 @@
+name: Update Nix Deps
+on:
+  workflow_dispatch: # allows manual triggering
+  schedule:
+    - cron: '0 0 1 * *' # runs monthly on the first day of the month at 00:00
+
+jobs:
+  lockfile:
+    runs-on: depot-ubuntu-24.04
+    if: github.repository == 'atuinsh/atuin'
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v6
+      - name: Install Nix
+        uses: DeterminateSystems/nix-installer-action@main
+      - name: Update flake.lock
+        uses: DeterminateSystems/update-flake-lock@main
+        with:
+          pr-title: "chore(deps): update flake.lock"
+          pr-labels: |
+            dependencies

reference/atuin-18.16.1/.gitignore

@@ -0,0 +1,17 @@
+.DS_Store
+/target
+*/target
+.env
+.idea/
+.vscode/
+result
+publish.sh
+.envrc
+.planning/
+
+ui/backend/target
+ui/backend/gen
+
+sqlite-server.db*
+
+.atuin/permissions.*.toml

reference/atuin-18.16.1/.mailmap

@@ -0,0 +1,14 @@
+networkException <git@nwex.de> <github@nwex.de>
+Violet Shreve <github@shreve.io> <jacob@shreve.io>
+Chris Rose <offline@offby1.net> <offbyone@github.com>
+Conrad Ludgate <conradludgate@gmail.com> <conrad.ludgate@truelayer.com>
+Cristian Le <github@lecris.me> <cristian.le@mpsd.mpg.de>
+Dennis Trautwein <git@dtrautwein.eu> <dennis.trautwein@posteo.de>
+Ellie Huxtable <ellie@atuin.sh> <e@elm.sh> 
+Ellie Huxtable <ellie@atuin.sh> <ellie@elliehuxtable.com> 
+Frank Hamand <frankhamand@gmail.com> <frank.hamand@coinbase.com>
+Jakob Schrettenbrunner <dev@schrej.net> <jakob.schrettenbrunner@telekom.de>
+Nemo157 <git@nemo157.com> <github@nemo157.com>
+Richard de Boer <git@tubul.net> <github@tubul.net>
+Sandro <sandro.jaeckel@gmail.com> <sandro.jaeckel@sap.com>
+TymanWasTaken <tbeckman530@gmail.com> <ty@blahaj.land>

reference/atuin-18.16.1/.rustfmt.toml

@@ -0,0 +1,4 @@
+reorder_imports = true
+# uncomment once stable
+#imports_granularity = "crate"
+#group_imports = "StdExternalCrate"